- FONDECYT Iniciacion. Project number 11140342, 2014-2017. “From gene expression data to dynamic simulation of gene regulatory networks: development of inference methods based on local motifs and their biological applications.”. Director: Dr. Alberto J. M. Martin
- FONDECYT-Chile. Project number 1050950, 2005-2007. “Search for new non-nucleoside HIV-1 reverse transcriptase inhibitors: Design, synthesis and biological evaluations of new benzoimidazolic derivatives”. Director: Dr. Hernán Pessoa-Mahana. Co-investigator: Dr. Tomás Pérez-Acle
- FONDEF-Chile. Project number GS02001, 2002-2005. “Genomic and gene expression studies in Vitis: viral infection response and detection kits development”. Director: Dr. Patricio Arce. Co-investigator: Dr. Tomás Pérez-Acle
- ITC-Americas – Research Development and Engineering Command (RDECOM), US-ARMY, USA, 2006-2007. Project number 06-001(2006). Development of lead compounds as fusion inhibitors for Dengue virus (phase I). Director: Dr. Tomás Pérez-Acle
- Hewlett Packard Laboratories USA (Palo Alto, CA) 2007. Development of coarse-grained force fields to study thermal diffusion in supercomputer clusters. Project number HPLABS-2007CHI001. Director: Dr. Tomás Pérez-Acle
- US Army Medical Research and Materiel Command, project number W81XWH-08-1-0285 (2008-2009). Development of lead compounds as fusion inhibitors for Dengue virus (phase II). Director: Dr. Tomás Pérez-Acle
- 6. ACTION-Grid project. Support Action 224176 for European Economic Community FP-07 “International Cooperative Action on Grid Computing and Biomedical Informatics between the European Union, Latin America, the Western Balkans and North Africa”. 2008 – 2009. Director: Dr. Victor Maojo (U. Politécnica de Madrid). Co-investigator: Dr. Tomás Pérez-Acle
- FONDEF TIC-EDU. Project number TE08I1021 2008 – 2010. “Sistema de Aprendizaje Colaborativo Basado en Infraestructura Grid (SACGRID): Aplicaciones en Ciencias Biológicas y Biotecnología”. Director: Dr. Tomas Perez-Acle.
- Programa Interdisciplinario VRAID 2008. Pontificia Universidad Católica de Chile. “Multidisciplinary studies of biological membranes onto SiO2 surfaces for applications in Bionanotechnology”. Director: Dr. Tomas Perez-Acle
- Fundación COPEC-UC Sexto Concurso de Proyectos de Desarrollo de Recursos Naturales (2008 – 2009). “Natural-derivative compounds as novel varroicidal”. Director: Dr. Patricio Huenchuñir. Co-investigator: Dr. Tomas Perez-Acle
- Proyecto Financiamiento Basal (PFB16) (2008 – 2014). Fundación Ciencia para la Vida. Director: Dr. Pablo Valenzuela. Collaborator: Dr. Tomas Perez-Acle
- Proyecto FONDECYT Regular 2010. “Multidisciplinary studies of organic chain molecules and biological membranes onto solid surfaces for applications in Nanotechnology”. Project number 1100882. Project Director: Dr. Ulrich Volkmann. Co-investigator: Dr. Tomas Perez-Acle.
- Anillo Científico ACT71-Biomed 2009. “Pro-inflammatory conditions increase the permeability of the cell membrane through pathways that offer new therapeutic targets for human diseases”. Tercer Concurso Nacional de Proyectos de Anillos de Investigación en Ciencia y Tecnología 2009. Project Director: Dr. Juan Carlos Sáez. Collaborator: Dr. Tomas Perez-Acle.
- Instituto Milenio Centro Interdisciplinario de Neurociencias de Valparaíso (CINV). Director: Dr. Ramón Latorre de la Cruz. Principal Investigator: Dr. Tomas Perez-Acle